13.18 6997 6997 U 0 unclassified 86.82 46077 3 R 1 root 85.12 45174 78 R1 131567 cellular organisms 84.97 45096 454 D 2 Bacteria 69.88 37088 0 D1 1783270 FCB group 69.88 37088 0 D2 68336 Bacteroidota/Chlorobiota group 69.88 37088 235 P 976 Bacteroidota 69.44 36853 0 C 200643 Bacteroidia 69.44 36853 2530 O 171549 Bacteroidales 61.19 32475 884 F 815 Bacteroidaceae 37.18 19732 10312 G 816 Bacteroides 7.46 3961 3850 S 820 Bacteroides uniformis 0.21 111 111 S1 997890 Bacteroides uniformis CL03T12C37 4.86 2579 2579 S 818 Bacteroides thetaiotaomicron 1.61 855 851 S 47678 Bacteroides caccae 0.01 4 4 S1 997873 Bacteroides caccae CL03T12C61 1.22 650 650 S 291644 Bacteroides salyersiae 1.15 610 609 S 817 Bacteroides fragilis 0.00 1 1 S1 295405 Bacteroides fragilis YCH46 1.11 590 590 S 28116 Bacteroides ovatus 0.18 95 95 S 371601 Bacteroides xylanisolvens 0.07 39 9 G1 2646097 unclassified Bacteroides 0.04 22 22 S 556259 Bacteroides sp. D2 0.01 5 5 S 2763022 Bacteroides sp. M10 0.01 3 3 S 2785531 Bacteroides sp. HF-162 0.03 18 18 S 674529 Bacteroides faecis 0.02 10 10 S 291645 Bacteroides nordii 0.02 8 8 S 28111 Bacteroides eggerthii 0.01 5 4 S 46506 Bacteroides stercoris 0.00 1 1 S1 449673 Bacteroides stercoris ATCC 43183 22.34 11859 2727 G 909656 Phocaeicola 16.96 9000 9000 S 821 Phocaeicola vulgatus 0.25 132 132 S 357276 Phocaeicola dorei 1.53 812 0 F 2005525 Tannerellaceae 1.53 812 200 G 375288 Parabacteroides 0.75 398 398 S 46503 Parabacteroides merdae 0.37 199 199 S 823 Parabacteroides distasonis 0.03 15 15 S 328812 Parabacteroides goldsteinii 1.51 800 0 F 171550 Rikenellaceae 1.51 800 87 G 239759 Alistipes 0.86 458 361 S 214856 Alistipes finegoldii 0.18 97 97 S1 679935 Alistipes finegoldii DSM 17242 0.21 109 0 S 1470347 Alistipes ihumii 0.21 109 109 S1 1211813 Alistipes ihumii AP11 0.14 75 75 S 328813 Alistipes onderdonkii 0.10 51 0 S 328814 Alistipes shahii 0.10 51 51 S1 717959 Alistipes shahii WAL 8301 0.04 19 19 S 2585118 Alistipes communis 0.00 1 0 G1 538948 environmental samples 0.00 1 1 S 538949 uncultured Alistipes sp. 0.40 212 0 F 1853231 Odoribacteraceae 0.40 211 0 G 283168 Odoribacter 0.40 211 211 S 28118 Odoribacter splanchnicus 0.00 1 0 G 574697 Butyricimonas 0.00 1 1 S 1472416 Butyricimonas faecihominis 0.02 12 0 F 171551 Porphyromonadaceae 0.02 12 0 G 836 Porphyromonas 0.02 9 9 S 322095 Porphyromonas somerae 0.01 3 0 S 28123 Porphyromonas asaccharolytica 0.01 3 3 S1 879243 Porphyromonas asaccharolytica DSM 20707 0.02 8 0 F 171552 Prevotellaceae 0.01 7 0 G 2974257 Hoylesella 0.01 7 7 S 28127 Hoylesella buccalis 0.00 1 0 G 2974251 Segatella 0.00 1 1 S 165179 Segatella copri 0.01 4 0 F 2005473 Muribaculaceae 0.01 3 0 G 1918540 Muribaculum 0.01 3 3 S 1796646 Muribaculum intestinale 0.00 1 0 G 2518495 Duncaniella 0.00 1 1 S 2518971 Duncaniella dubosii 14.09 7480 57 D1 1783272 Terrabacteria group 13.85 7353 224 P 1239 Bacillota 11.55 6130 255 C 186801 Clostridia 8.49 4507 0 O 3085636 Lachnospirales 8.49 4507 495 F 186803 Lachnospiraceae 5.95 3159 11 G 2316020 Mediterraneibacter 5.23 2777 2777 S 33038 Mediterraneibacter gnavus 0.70 369 340 S 33039 [Ruminococcus] torques 0.05 29 29 S1 657313 [Ruminococcus] torques L2-14 0.00 2 0 S 46228 [Ruminococcus] lactaris 0.00 2 2 S1 471875 [Ruminococcus] lactaris ATCC 29176 1.13 601 9 G 2719313 Enterocloster 1.07 569 569 S 208479 Enterocloster bolteae 0.03 14 0 S 333367 Enterocloster asparagiformis 0.03 14 14 S1 518636 [Clostridium] asparagiforme DSM 15981 0.02 9 9 S 1531 Enterocloster clostridioformis 0.11 58 2 G 189330 Dorea 0.05 29 29 S 39486 Dorea formicigenerans 0.05 27 27 S 88431 Dorea longicatena 0.10 53 18 G 572511 Blautia 0.02 9 9 S 89014 Blautia luti 0.01 7 0 S 418240 Blautia wexlerae 0.01 7 7 S1 1121115 Blautia wexlerae DSM 19850 0.01 7 7 S 1912897 Blautia argi 0.01 4 0 S 40520 Blautia obeum 0.01 4 4 S1 411459 Blautia obeum ATCC 29174 0.01 3 0 G1 2648079 unclassified Blautia 0.01 3 3 S 2479767 Blautia sp. SC05B48 0.00 2 2 S 1796616 Blautia pseudococcoides 0.00 2 2 S 2877527 Blautia parvula 0.00 1 1 S 33035 Blautia producta 0.08 45 0 G 1506553 Lachnoclostridium 0.08 45 45 S 29347 [Clostridium] scindens 0.06 34 0 G 841 Roseburia 0.05 28 2 S 166486 Roseburia intestinalis 0.05 24 24 S1 718255 Roseburia intestinalis XB6B4 0.00 2 2 S1 657315 Roseburia intestinalis M50/1 0.01 5 5 S 301301 Roseburia hominis 0.00 1 1 S 2763062 Roseburia rectibacter 0.04 23 0 G 33042 Coprococcus 0.04 22 22 S 410072 Coprococcus comes 0.00 1 1 S 116085 Coprococcus catus 0.03 18 0 G 207244 Anaerostipes 0.02 12 12 S 649756 Anaerostipes hadrus 0.01 6 6 S 105841 Anaerostipes caccae 0.02 11 0 G 2569097 Anaerobutyricum 0.02 11 11 S 39488 Anaerobutyricum hallii 0.01 5 0 G 1766253 Agathobacter 0.01 5 5 S 39491 Agathobacter rectalis 0.01 3 0 G 248744 Marvinbryantia 0.01 3 0 S 168384 Marvinbryantia formatexigens 0.01 3 3 S1 478749 Marvinbryantia formatexigens DSM 14469 0.00 1 0 G 3076670 Claveliimonas 0.00 1 1 S 3028070 Claveliimonas bilis 0.00 1 0 G 2944193 Simiaoa 0.00 1 1 S 2763672 Simiaoa sunii 2.57 1365 17 O 186802 Eubacteriales 2.26 1197 109 F 216572 Oscillospiraceae 1.45 768 195 G 216851 Faecalibacterium 0.78 412 360 S 853 Faecalibacterium prausnitzii 0.09 50 50 S1 718252 Faecalibacterium prausnitzii L2-6 0.00 2 2 S1 657322 Faecalibacterium prausnitzii SL3/3 0.30 158 8 G1 2646395 unclassified Faecalibacterium 0.26 136 136 S 2929493 Faecalibacterium sp. I3-3-89 0.01 6 6 S 2929490 Faecalibacterium sp. I2-3-92 0.01 5 5 S 2929494 Faecalibacterium sp. I4-1-79 0.00 2 2 S 2929492 Faecalibacterium sp. I3-3-33 0.00 1 1 S 2929495 Faecalibacterium sp. I4-3-84 0.01 3 3 S 411483 Faecalibacterium duncaniae 0.32 171 0 G 1905344 Ruthenibacterium 0.32 171 171 S 1550024 Ruthenibacterium lactatiformans 0.16 86 0 G 946234 Flavonifractor 0.16 86 86 S 292800 Flavonifractor plautii 0.04 19 0 G 244127 Anaerotruncus 0.04 19 19 S 169435 Anaerotruncus colihominis 0.03 14 0 G 2892396 Vescimonas 0.02 8 8 S 2714355 Vescimonas coprocola 0.01 6 6 S 2714353 Vescimonas fastidiosa 0.02 11 0 G 2591381 Dysosmobacter 0.02 11 11 S 2093857 Dysosmobacter welbionis 0.02 10 0 G 2172004 Lawsonibacter 0.02 10 10 S 2108523 Lawsonibacter asaccharolyticus 0.01 7 0 G 459786 Oscillibacter 0.01 4 4 S 2763056 Oscillibacter hominis 0.01 3 0 G1 2629304 unclassified Oscillibacter 0.01 3 3 S 2109687 Oscillibacter sp. PEA192 0.00 2 0 G 2892397 Pusillibacter 0.00 2 2 S 2714358 Pusillibacter faecalis 0.27 143 0 F 31979 Clostridiaceae 0.25 132 0 G 1649459 Hungatella 0.25 132 121 S 154046 Hungatella hathewayi 0.02 11 11 S1 742737 Hungatella hathewayi WAL-18680 0.01 7 0 G 1266 Sarcina 0.01 7 0 G1 2619470 unclassified Sarcina 0.01 7 7 S 2726954 Sarcina sp. JB2 0.01 4 1 G 1485 Clostridium 0.00 2 2 S 1504 Clostridium septicum 0.00 1 0 G1 2614128 unclassified Clostridium 0.00 1 1 S 411486 Clostridium sp. M62/1 0.01 3 0 F 3085642 Butyricicoccaceae 0.01 3 0 G 1928820 Intestinibacillus 0.01 3 0 G1 2635293 unclassified Intestinibacillus 0.01 3 3 S 3079303 Intestinibacillus sp. NTUH-41-i26 0.01 3 0 O1 538999 Eubacteriales incertae sedis 0.01 3 2 G 1686313 Fenollaria 0.00 1 1 S 938288 Fenollaria massiliensis 0.00 2 0 F 186806 Eubacteriaceae 0.00 2 0 G 1730 Eubacterium 0.00 2 2 S 53442 Eubacterium callanderi 0.01 3 0 O 3082720 Peptostreptococcales 0.01 3 0 F 186804 Peptostreptococcaceae 0.00 2 0 G 1870884 Clostridioides 0.00 2 2 S 1496 Clostridioides difficile 0.00 1 0 G 1501226 Romboutsia 0.00 1 1 S 1115758 Romboutsia ilealis 1.02 542 0 C 526524 Erysipelotrichia 1.02 542 1 O 526525 Erysipelotrichales 1.02 539 1 F 2810280 Coprobacillaceae 0.90 477 0 G 3025755 Thomasclavelia 0.88 466 466 S 1547 Thomasclavelia ramosa 0.02 11 11 S 1522 [Clostridium] innocuum 0.11 59 0 G 2678885 Faecalibacillus 0.11 59 59 S 1982626 Faecalibacillus intestinalis 0.00 2 0 G 135858 Catenibacterium 0.00 2 2 S 100886 Catenibacterium mitsuokai 0.00 2 0 F 128827 Erysipelotrichaceae 0.00 1 0 G 2749267 Amedibacterium 0.00 1 1 S 2583452 Amedibacterium intestinale 0.00 1 0 G 3059504 Allocoprobacillus 0.00 1 1 S 2944914 Allocoprobacillus halotolerans 0.84 448 5 C 909932 Negativicutes 0.83 442 0 O 1843488 Acidaminococcales 0.83 442 0 F 909930 Acidaminococcaceae 0.75 398 0 G 33024 Phascolarctobacterium 0.75 398 398 S 33025 Phascolarctobacterium faecium 0.08 44 0 G 904 Acidaminococcus 0.08 44 4 S 187327 Acidaminococcus intestini 0.08 40 40 S1 568816 Acidaminococcus intestini RyC-MR95 0.00 1 0 O 1843489 Veillonellales 0.00 1 0 F 31977 Veillonellaceae 0.00 1 0 G 29465 Veillonella 0.00 1 1 S 39777 Veillonella atypica 0.02 8 0 C 91061 Bacilli 0.02 8 0 O 186826 Lactobacillales 0.01 5 0 F 1300 Streptococcaceae 0.01 5 4 G 1301 Streptococcus 0.00 1 1 S 1302 Streptococcus gordonii 0.00 2 0 F 81852 Enterococcaceae 0.00 2 0 G 1350 Enterococcus 0.00 2 2 S 71452 Enterococcus raffinosus 0.00 1 0 F 186827 Aerococcaceae 0.00 1 0 G 46123 Abiotrophia 0.00 1 1 S 46125 Abiotrophia defectiva 0.00 1 0 C 1737404 Tissierellia 0.00 1 0 O 1737405 Tissierellales 0.00 1 0 F 1570339 Peptoniphilaceae 0.00 1 0 G 150022 Finegoldia 0.00 1 1 S 1260 Finegoldia magna 0.13 70 0 P 201174 Actinomycetota 0.10 53 0 C 1760 Actinomycetes 0.10 53 0 O 85004 Bifidobacteriales 0.10 53 0 F 31953 Bifidobacteriaceae 0.10 53 21 G 1678 Bifidobacterium 0.04 19 16 S 1686 Bifidobacterium catenulatum 0.01 3 3 S1 630129 Bifidobacterium catenulatum subsp. kashiwanohense 0.02 9 9 S 28026 Bifidobacterium pseudocatenulatum 0.01 4 4 S 216816 Bifidobacterium longum 0.03 17 4 C 84998 Coriobacteriia 0.02 13 0 O 1643822 Eggerthellales 0.02 13 0 F 1643826 Eggerthellaceae 0.02 13 0 G 84111 Eggerthella 0.02 13 13 S 84112 Eggerthella lenta 0.12 65 2 P 1224 Pseudomonadota 0.08 45 1 C 1236 Gammaproteobacteria 0.08 44 2 O 91347 Enterobacterales 0.08 42 37 F 543 Enterobacteriaceae 0.01 5 2 G 561 Escherichia 0.01 3 3 S 562 Escherichia coli 0.03 15 1 C 28216 Betaproteobacteria 0.03 14 0 O 80840 Burkholderiales 0.03 14 0 F 995019 Sutterellaceae 0.03 14 0 G 40544 Sutterella 0.03 14 14 S 40545 Sutterella wadsworthensis 0.01 3 0 C 28211 Alphaproteobacteria 0.01 3 1 O 356 Hyphomicrobiales 0.00 2 0 F 82115 Rhizobiaceae 0.00 2 1 F1 227290 Rhizobium/Agrobacterium group 0.00 1 0 G 357 Agrobacterium 0.00 1 0 G1 1183400 Agrobacterium tumefaciens complex 0.00 1 1 S 358 Agrobacterium tumefaciens 0.01 4 0 P 29547 Campylobacterota 0.01 4 0 C 3031852 Epsilonproteobacteria 0.01 4 0 O 213849 Campylobacterales 0.01 4 0 F 72294 Campylobacteraceae 0.01 4 0 G 194 Campylobacter 0.01 4 4 S 76517 Campylobacter hominis 0.01 4 0 D1 1783257 PVC group 0.01 4 0 P 74201 Verrucomicrobiota 0.01 4 0 C 203494 Verrucomicrobiae 0.01 4 0 O 48461 Verrucomicrobiales 0.01 4 0 F 1647988 Akkermansiaceae 0.01 4 0 G 239934 Akkermansia 0.01 4 4 S 239935 Akkermansia muciniphila 0.00 1 0 P 32066 Fusobacteriota 0.00 1 0 C 203490 Fusobacteriia 0.00 1 0 O 203491 Fusobacteriales 0.00 1 0 F 203492 Fusobacteriaceae 0.00 1 1 G 848 Fusobacterium 1.70 900 0 D 10239 Viruses 1.70 900 0 D1 2731341 Duplodnaviria 1.70 900 0 K 2731360 Heunggongvirae 1.70 900 0 P 2731618 Uroviricota 1.70 900 0 C 2731619 Caudoviricetes 1.70 900 0 O 1978007 Crassvirales 1.70 900 0 F 2942964 Intestiviridae 1.70 900 1 F1 2942972 Crudevirinae 1.69 899 342 G 2948652 Carjivirus 0.97 514 514 S 2955582 Carjivirus communis 0.08 43 0 S 2955583 Carjivirus hominis 0.08 43 43 S1 2986399 uncultured phage cr99_1